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@vanvalenlab

vanvalenlab

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  1. deepcell-tf deepcell-tf Public

    Deep Learning Library for Single Cell Analysis

    Python 465 105

  2. deepcell-label deepcell-label Public

    Cloud-based data annotation tools for biological images

    JavaScript 81 16

  3. kiosk-console kiosk-console Public

    DeepCell Kiosk Distribution for Kubernetes on GKE and AWS

    Shell 36 7

  4. deepcell-applications deepcell-applications Public

    Run DeepCell Applications

    Python 8 5

Repositories

Showing 10 of 38 repositories
  • cellSAM Public

    Codebase for "A Foundation Model for Cell Segmentation"

    vanvalenlab/cellSAM’s past year of commit activity
    Python 110 19 23 7 Updated Sep 23, 2025
  • cellsam-demo-site Public

    Source code for cellsam.deepcell.org

    vanvalenlab/cellsam-demo-site’s past year of commit activity
    TypeScript 0 1 1 13 Updated Sep 11, 2025
  • deepcell-types Public
    vanvalenlab/deepcell-types’s past year of commit activity
    Python 7 3 3 1 Updated Sep 9, 2025
  • deepcell-spots Public

    Deep Learning Library for Spot Detection

    vanvalenlab/deepcell-spots’s past year of commit activity
    Python 20 5 5 0 Updated Sep 8, 2025
  • DeepCellTypes-2024_Wang_et_al Public
    vanvalenlab/DeepCellTypes-2024_Wang_et_al’s past year of commit activity
    Jupyter Notebook 0 0 0 2 Updated Jun 30, 2025
  • torch-mesmer Public

    pytorch implementation of mesmer

    vanvalenlab/torch-mesmer’s past year of commit activity
    Python 0 1 12 1 Updated Jan 23, 2025
  • intro-to-deepcell Public archive

    An introduction to deepcell and deep learning

    vanvalenlab/intro-to-deepcell’s past year of commit activity
    Jupyter Notebook 153 27 8 0 Updated Oct 21, 2024
  • deepcell-tf Public

    Deep Learning Library for Single Cell Analysis

    vanvalenlab/deepcell-tf’s past year of commit activity
    Python 465 105 49 (1 issue needs help) 2 Updated Aug 30, 2024
  • Caliban-2024_Schwartz_et_al Public
    vanvalenlab/Caliban-2024_Schwartz_et_al’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 0 0 0 Updated Aug 8, 2024
  • deepcell-tracking Public

    Track cells and build cell lineages

    vanvalenlab/deepcell-tracking’s past year of commit activity
    Python 35 6 9 (1 issue needs help) 0 Updated Aug 6, 2024
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