A bunch of parsers for PE and PDB formats in C++
Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".
Python code to color a PDB structure based on parameters from a multiple sequence alignment
A Python script to map PDB ID + chain ID to UniProt ID.
Project for analysis of protein structures in .pdb file format. It calculates some structure parameters and can compare two structures by calculating the RMSD.
Generating PDB Structure Models via Modeller-Python
An application for illustrating the relative distances between protein structures.
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
Get the Short Macromolecular level Summary for mmCIF file.
Python script that retrives molecular structure data from online databases.
MolBridge-NonCovalent-Atlas is a comprehensive resource and toolkit for mapping, visualizing, and analyzing non-covalent interactions in molecular structures. Designed for researchers and computational chemists, this project offers intuitive tools to identify, annotate, and interpret a broad spectrum of non-covalent interactions—enhancing insights
Coiled-coil Crick Paramaterization PDB modifier for further design
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