RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
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May 30, 2021 - Python
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genome-scaffolding
Here are 14 public repositories matching this topic...
⛓ Correct misassemblies using linked AND long reads
bioinformatics genome-assembly genome-scaffolding 10xgenomics misassembly-correction linked-reads bioinformatics-tool
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Sep 29, 2023 - Python
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
golang pipeline genomics genetic-algorithm hi-c genome-assembly genome-scaffolding contigs polyploid heterozygous lachesis inter-contig-links
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Jan 3, 2025 - Jupyter Notebook
Suite of tools for use in genome assembly and consensus. Work in progress.
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Mar 22, 2021 - Go
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
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May 14, 2025 - Python
🍶 Genome assembly with short sequence reads
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Jan 21, 2024 - Perl
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
python genomics comparative-genomics genome-assembly genome-scaffolding scaffold-assembly asssembly-reconciliation
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Apr 13, 2020 - Python
⛓️ Construct a Physical Map from Linked Reads
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Apr 5, 2024 - Python
Pipeline for genome scaffolding by modelling distributions of HiC pairs
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Dec 7, 2022 - C
Method for rescuing collapsed contigs.
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Jul 26, 2022 - Python
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
bioinformatics genome-assembly bioinformatics-analysis genome-scaffolding 10xgenomics misassembly-correction linked-reads
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Sep 18, 2018 - Makefile
Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
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May 26, 2016 - Go
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
bioinformatics manuscript genome-assembly genome-scaffolding 10xgenomics misassembly-correction linked-reads
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Nov 29, 2018 - TeX
Wrapper tool of RaGOO by CWL and Docker
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Jul 4, 2019 - Common Workflow Language
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