Resource for summarizing and tracking new array samples published to NCBI's Gene Expression Omnibus (GEO) database.
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Jan 11, 2023 - Python
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epigenetics-data
Here are 5 public repositories matching this topic...
Repository of tools and analyses used during: "Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing" (in process)
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Jan 28, 2025 - Jupyter Notebook
Fast and efficient conversion of Nanopore modBAM from guppy basecaller to BED files for differential methylation and machine learning predictions
bam-files bioinformatics nanopore pipeline genomics sequencing methylation epigenetics oxford-nanopore cpg basecaller bed-format long-read-sequencing genomic-analysis methylation-analysis guppy oxford-nanopore-data oxford-nanopore-sequencing epigenetics-data modbam
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Oct 17, 2025 - Shell
After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data
transcription-factors epigenetics chip-seq functional-genomics chip-seq-data chip-seq-analysis regulatory-elements chip-seq-pipeline epigenetics-data schizosaccharomyces-pombe
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Jun 9, 2023 - R
Bioinformatic, statistical & ML analysis of Homologous Recombination Deficiency in triple-negative breast cancer
biostatistics bioinformatics-analysis biomedical-data-science applied-machine-learning epigenetics-data
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Aug 16, 2024 - R
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