Skip to content

@MIC-DKFZ MIC-DKFZ

Change the repository type filter

All

    Repositories list

    101 repositories

    • panther

      Public
      Python
      •
      Apache License 2.0
      •1•3•0•0•Updated Sep 27, 2025Sep 27, 2025

    • AVID

      Public
      Automated processing of Versatile Image Data.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • ViData

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Sep 24, 2025Sep 24, 2025

    • ContrastiveVirtualStaining

      Public
      0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • napari-data-inspection

      Public
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated Sep 22, 2025Sep 22, 2025

    • napari-nninteractive

      Public
      Python
      •
      Apache License 2.0
      •12•96•9•2•Updated Sep 19, 2025Sep 19, 2025

    • nnActive

      Public
      Python
      •
      Apache License 2.0
      •0•8•0•0•Updated Sep 18, 2025Sep 18, 2025

    • napari_toolkit

      Public
      Python
      •
      Apache License 2.0
      •3•4•0•1•Updated Sep 8, 2025Sep 8, 2025

    • nnssl

      Public
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •18•91•5•2•Updated Sep 2, 2025Sep 2, 2025

    • LongiSeg

      Public
      Python
      •
      Apache License 2.0
      •4•28•5•0•Updated Sep 2, 2025Sep 2, 2025

    • autoPET-interactive

      Public
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Sep 2, 2025Sep 2, 2025

    • BodyPartRegression

      Public
      Python
      •
      Apache License 2.0
      •13•76•3•1•Updated Sep 2, 2025Sep 2, 2025

    • Temporal-Flow-Matching

      Public
      0•2•0•0•Updated Aug 29, 2025Aug 29, 2025

    • radtract

      Public
      RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.
      Python
      •0•13•0•0•Updated Aug 28, 2025Aug 28, 2025

    • deki-smpc

      Public
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated Aug 27, 2025Aug 27, 2025

    • deki-smpc-server

      Public
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Aug 27, 2025Aug 27, 2025

    • nnInteractive

      Public
      nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.
      Python
      •
      Apache License 2.0
      •30•279•13•0•Updated Aug 20, 2025Aug 20, 2025

    • LesionLocator

      Public
      LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.
      trackingtumorsegmentation3dlesion
      Python
      •
      GNU General Public License v3.0
      •6•70•4•0•Updated Aug 18, 2025Aug 18, 2025

    • RTTB

      Public
      Swiss army knife for radiotherapy analysis
      dicom-rtradiotherapymedical-physicsanaylsisdosedose-statistics
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •9•30•1•0•Updated Aug 16, 2025Aug 16, 2025

    • nnUNet

      Public
      segmentation
      Python
      •
      Apache License 2.0
      •2.2k•7.3k•326•24•Updated Aug 15, 2025Aug 15, 2025

    • nnDetection

      Public
      nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
      medical-imagingmedical-image-computing3d-object-detectionpytorch-implementationretina-unetdetectionmedical
      Python
      •
      Apache License 2.0
      •112•608•21•2•Updated Aug 14, 2025Aug 14, 2025

    • MultiTalent

      Public
      Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"
      Python
      •
      Apache License 2.0
      •4•60•0•1•Updated Aug 11, 2025Aug 11, 2025

    • BreastDivider

      Public
      0•21•1•0•Updated Aug 9, 2025Aug 9, 2025

    • aorta-aneurysm-assessment

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Aug 4, 2025Aug 4, 2025

    • confly

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • nnDetection-finetuning

      Public
      0•0•1•0•Updated Jul 15, 2025Jul 15, 2025

    • Skeleton-Recall

      Public
      Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
      Python
      •
      Apache License 2.0
      •11•112•5•1•Updated Jul 11, 2025Jul 11, 2025

    • kaggle_BYU_Locating_Bacterial-Flagellar_Motors_2025_solution

      Public
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Jul 11, 2025Jul 11, 2025

    • ScribbleBench

      Public
      [MICCAI 2025] Revisiting 3D Medical Scribble Supervision: Benchmarking Beyond Cardiac Segmentation
      Python
      •
      Apache License 2.0
      •1•3•1•0•Updated Jul 2, 2025Jul 2, 2025

    • BraTPRO

      Public
      Python
      •
      Apache License 2.0
      •0•5•1•0•Updated Jul 1, 2025Jul 1, 2025