Adding back externally defined constant dendritic delays and other small features and fixes for the compartmental feature. [WIP] #1241
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…t_versions_compat
…nt/updated-jinja-templates_fix
…plates_fix Maint/updated jinja templates fix
# Conflicts: # doc/running/running_nest_compartmental.rst # pynestml/cocos/co_co_cm_continuous_input_model.py # pynestml/cocos/co_cos_manager.py # pynestml/codegeneration/code_generator_utils.py # pynestml/codegeneration/nest_compartmental_code_generator.py # pynestml/codegeneration/printers/nest_variable_printer.py # pynestml/codegeneration/resources_nest_compartmental/cm_neuron/cm_neuroncurrents_@NEURON_NAME@.cpp.jinja2 # pynestml/codegeneration/resources_nest_compartmental/cm_neuron/cm_neuroncurrents_@NEURON_NAME@.h.jinja2 # pynestml/codegeneration/resources_nest_compartmental/cm_neuron/cm_tree_@NEURON_NAME@.cpp.jinja2 # pynestml/frontend/pynestml_frontend.py # pynestml/transformers/synapse_post_neuron_transformer.py # pynestml/utils/ast_mechanism_information_collector.py # pynestml/utils/ast_vector_parameter_setter_and_printer.py # pynestml/utils/continuous_input_processing.py # pynestml/utils/mechanism_processing.py # pynestml/utils/mechs_info_enricher.py # pynestml/utils/messages.py # tests/nest_compartmental_tests/resources/cm_default.nestml # tests/nest_compartmental_tests/resources/concmech.nestml # tests/nest_compartmental_tests/resources/continuous_test.nestml # tests/nest_compartmental_tests/test__cocos.py # tests/nest_compartmental_tests/test__concmech_model.py # tests/nest_compartmental_tests/test__continuous_input.py # tests/nest_compartmental_tests/test__interaction_with_disabled_mechanism.py
Co-authored-by: clinssen <c.linssen@fz-juelich.de>
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In the normal nestml generation pipeline, the connection between the STDP synapse and the post-synaptic neuron has a minimum delay determined by the simulation resolution. Due to the STDP dynamics being directly integrated into the receptors in the compartmental case, we do not implicitly have such a delay and have initially not regarded it as necessary, as a delay should emerge from the presence of a compartmental dendritic structure. In a simple one-compartment model, this creates a small mismatch to the behaviour in the point neuron case due to the one-timestep delay missing.