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tools_for_labeled_images

Fiji plugins

Installation : in Fiji repository, go to "plugins" directory and create a "Tools" directory (if absent)

  • Replace value tool : put the ReplaceValue_tool.class inside
  • extract labels tool : put the extract_labels_Tool.class inside

Replace value tool : add an "R" tool on the Fiji interface (if full, found in ">>"). When selected, click on the selected label to erase it (replace the label value by zero).

extract labels tool : add an "e" tool on the Fiji interface (if full, found in ">>"). When selected, click to selected labels to extract. Ctrl+click to create 2 images : one with the selected labels, the second with the unselected labels.

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